No. words: 1855; after pruning: 1829


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.5 (1,1:1596)  249  0.00 0.39 0.00  BF291730Ld12P081B01P081B071F1_045.ab1      660   916 (0)  C BF291730Ld12P081B01P081B071R1_045.ab1   (0)   939   682 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  128 nodes

 66 str. conn. components

Path
    1    BF291730Ld12P081B01P081B071F1_045.ab1     1 
  783  C BF291730Ld12P081B01P081B071R1_045.ab1   816 
  791    BF291730Ld12P081B01P081B071F1_045.ab1   791 
  795  C BF291730Ld12P081B01P081B071R1_045.ab1   804 
  811    BF291730Ld12P081B01P081B071F1_045.ab1   811 
  815  C BF291730Ld12P081B01P081B071R1_045.ab1   784 
Contig length: old 1597, new 1598

Contig length: old 1598, new 1598
New start: 0