No. words: 2773; after pruning: 2721


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.7 (1,1:1)  696  0.28 0.00 0.00  BF291928Ta11P108D06P081C071R1_069.ab1        2   720 (2)    BF291928Ta11P108D06P081C071R1_037.ab1        1   719 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    2
    2    1

Chimera merges: 


Contig 3:  344 nodes

 174 str. conn. components

Path
    1    BF291928Ta11P108D06P081C071R1_069.ab1     1 
    5    BF291928Ta11P108D06P081C071R1_037.ab1     4 
   17    BF291928Ta11P108D06P081C071R1_069.ab1    17 
   72    BF291928Ta11P108D06P081C071R1_037.ab1    71 
   92    BF291928Ta11P108D06P081C071R1_069.ab1    92 
  140    BF291928Ta11P108D06P081C071R1_037.ab1   139 
  160    BF291928Ta11P108D06P081C071R1_069.ab1   160 
  168    BF291928Ta11P108D06P081C071R1_037.ab1   167 
  176    BF291928Ta11P108D06P081C071R1_069.ab1   176 
  204    BF291928Ta11P108D06P081C071R1_037.ab1   203 
  212    BF291928Ta11P108D06P081C071R1_069.ab1   212 
  300    BF291928Ta11P108D06P081C071R1_037.ab1   299 
  312    BF291928Ta11P108D06P081C071R1_069.ab1   312 
  468    BF291928Ta11P108D06P081C071R1_037.ab1   467 
  488    BF291928Ta11P108D06P081C071R1_069.ab1   488 
  528    BF291928Ta11P108D06P081C071R1_037.ab1   527 
  540    BF291928Ta11P108D06P081C071R1_069.ab1   540 
  556    BF291928Ta11P108D06P081C071R1_037.ab1   555 
  568    BF291928Ta11P108D06P081C071R1_069.ab1   568 
  572    BF291928Ta11P108D06P081C071R1_037.ab1   571 
  644    BF291928Ta11P108D06P081C071R1_069.ab1   644 
  648    BF291928Ta11P108D06P081C071R1_037.ab1   647 
  652    BF291928Ta11P108D06P081C071R1_069.ab1   652 
  656    BF291928Ta11P108D06P081C071R1_037.ab1   655 
  660    BF291928Ta11P108D06P081C071R1_069.ab1   660 
  676    BF291928Ta11P108D06P081C071R1_037.ab1   675 
  680    BF291928Ta11P108D06P081C071R1_069.ab1   680 
  688    BF291928Ta11P108D06P081C071R1_037.ab1   687 
  692    BF291928Ta11P108D06P081C071R1_069.ab1   692 
Contig length: old 722, new 722

Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BF291928Ta11P108D06P081C071F1_037.ab1     1 
Contig length: old 755, new 755

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BF291928Ta11P108D06P081C071F1_069.ab1     1 
Contig length: old 577, new 577

Contig length: old 722, new 722
New start: 0 
S Change at: 32; seg lengths: entry 1, contig 1