No. words: 3056; after pruning: 3004


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 16.0 (1,1:794)  727  0.66 0.00 0.00  BF291928Td09P108D06P081C071F1_039.ab1       33   795 (55)  C BF291928Td09P108D06P081C071R1_039.ab1   (6)   763     1 *
Merge:(0)    0    0.0 15.8 (2,1:2)  729  0.90 0.00 0.00  BF291928Td09P108D06P081C071F1_039.ab1        3   776 (74)    BF291928Td09P108D06P081C071F1_071.ab1        1   774 (0) *
Merge:(0)    0    0.0 10.7 (3,1:792)  588  2.71 0.00 0.15  BF291928Td09P108D06P081C071F1_039.ab1      131   794 (56)  C BF291928Td09P108D06P081C071R1_071.ab1   (0)   663     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       2        0
 6       1        0

Offset
  0       6 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1928 nodes

 465 str. conn. components

Path
    1    BF291928Td09P108D06P081C071F1_039.ab1     1 
   16    BF291928Td09P108D06P081C071F1_071.ab1    14 
   50    BF291928Td09P108D06P081C071F1_039.ab1    50 
   66    BF291928Td09P108D06P081C071F1_071.ab1    64 
   74    BF291928Td09P108D06P081C071F1_039.ab1    74 
  402  C BF291928Td09P108D06P081C071R1_039.ab1   394 
  410    BF291928Td09P108D06P081C071F1_039.ab1   410 
  562  C BF291928Td09P108D06P081C071R1_039.ab1   234 
  570    BF291928Td09P108D06P081C071F1_039.ab1   570 
  574  C BF291928Td09P108D06P081C071R1_039.ab1   222 
  582    BF291928Td09P108D06P081C071F1_039.ab1   582 
  622  C BF291928Td09P108D06P081C071R1_039.ab1   174 
  643    BF291928Td09P108D06P081C071F1_039.ab1   643 
  683  C BF291928Td09P108D06P081C071R1_039.ab1   113 
  690    BF291928Td09P108D06P081C071F1_039.ab1   690 
  696  C BF291928Td09P108D06P081C071R1_071.ab1    98 
  700    BF291928Td09P108D06P081C071F1_039.ab1   700 
  703  C BF291928Td09P108D06P081C071R1_071.ab1    91 
  704  C BF291928Td09P108D06P081C071R1_039.ab1    92 
  718    BF291928Td09P108D06P081C071F1_039.ab1   718 
  728  C BF291928Td09P108D06P081C071R1_039.ab1    68 
  732  C BF291928Td09P108D06P081C071R1_071.ab1    62 
  736  C BF291928Td09P108D06P081C071R1_039.ab1    60 
  746    BF291928Td09P108D06P081C071F1_039.ab1   746 
  750  C BF291928Td09P108D06P081C071R1_039.ab1    46 
  752  C BF291928Td09P108D06P081C071R1_071.ab1    42 
  756  C BF291928Td09P108D06P081C071R1_039.ab1    40 
  758    BF291928Td09P108D06P081C071F1_039.ab1   758 
  760    BF291928Td09P108D06P081C071F1_071.ab1   758 
  764    BF291928Td09P108D06P081C071F1_039.ab1   764 
  771  C BF291928Td09P108D06P081C071R1_071.ab1    23 
  779  C BF291928Td09P108D06P081C071R1_039.ab1    17 
  787    BF291928Td09P108D06P081C071F1_039.ab1   787 
Contig length: old 850, new 850

Contig length: old 850, new 850
New start: 0