No. words: 1677; after pruning: 1651


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.1 (1,1:874)  772  0.62 0.00 0.00  BF292295Ld07P114D02P114D051F1_045.ab1        1   800 (0)  C BF292295Ld07P114D02P114D051R1_045.ab1   (2)   875    76 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1  C BF292295Ld07P114D02P114D051R1_045.ab1   877 
    7    BF292295Ld07P114D02P114D051F1_045.ab1     5 
   35  C BF292295Ld07P114D02P114D051R1_045.ab1   843 
   48    BF292295Ld07P114D02P114D051F1_045.ab1    46 
  361  C BF292295Ld07P114D02P114D051R1_045.ab1   517 
  429    BF292295Ld07P114D02P114D051F1_045.ab1   427 
  449  C BF292295Ld07P114D02P114D051R1_045.ab1   429 
  457    BF292295Ld07P114D02P114D051F1_045.ab1   455 
  493  C BF292295Ld07P114D02P114D051R1_045.ab1   385 
Contig length: old 877, new 877

Contig length: old 877, new 877
New start: 0 
S Change at: 85; seg lengths: entry 1, contig 1