No. words: 1648; after pruning: 1622


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.0 (1,1:869)  760  0.26 0.00 0.00  BF292295Ld11P114D02P114D051F1_037.ab1       21   798 (0)  C BF292295Ld11P114D02P114D051R1_037.ab1   (0)   850    73 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1    BF292295Ld11P114D02P114D051F1_037.ab1     1 
  356  C BF292295Ld11P114D02P114D051R1_037.ab1   515 
  360    BF292295Ld11P114D02P114D051F1_037.ab1   360 
  368  C BF292295Ld11P114D02P114D051R1_037.ab1   503 
  424    BF292295Ld11P114D02P114D051F1_037.ab1   424 
  448  C BF292295Ld11P114D02P114D051R1_037.ab1   423 
  452    BF292295Ld11P114D02P114D051F1_037.ab1   452 
  476  C BF292295Ld11P114D02P114D051R1_037.ab1   395 
Contig length: old 870, new 870

Contig length: old 870, new 870
New start: 0 
S Change at: 38; seg lengths: entry 3, contig 3