No. words: 1742; after pruning: 1702


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.6 (1,1:882)  830  0.12 0.12 0.12  BF292295Ld13P114D02P114D051F1_041.ab1        1   853 (0)  C BF292295Ld13P114D02P114D051R1_041.ab1   (6)   883    31 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  420 nodes

 212 str. conn. components

Path
    1  C BF292295Ld13P114D02P114D051R1_041.ab1   889 
   10    BF292295Ld13P114D02P114D051F1_041.ab1     4 
   47  C BF292295Ld13P114D02P114D051R1_041.ab1   842 
   51    BF292295Ld13P114D02P114D051F1_041.ab1    45 
  247  C BF292295Ld13P114D02P114D051R1_041.ab1   642 
  251    BF292295Ld13P114D02P114D051F1_041.ab1   245 
  263  C BF292295Ld13P114D02P114D051R1_041.ab1   626 
  279    BF292295Ld13P114D02P114D051F1_041.ab1   273 
  331  C BF292295Ld13P114D02P114D051R1_041.ab1   558 
  335    BF292295Ld13P114D02P114D051F1_041.ab1   329 
  347  C BF292295Ld13P114D02P114D051R1_041.ab1   542 
  443    BF292295Ld13P114D02P114D051F1_041.ab1   437 
  455  C BF292295Ld13P114D02P114D051R1_041.ab1   434 
Contig length: old 889, new 888

Contig length: old 888, new 890
New start: 0 
I Change at: 21; seg lengths: entry 1, contig 0
I Change at: 855; seg lengths: entry 1, contig 0