No. words: 1706; after pruning: 1680


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.0 (1,1:883)  801  0.12 0.12 0.00  BF292295Ld16P114D02P114D051F1_035.ab1        8   828 (0)  C BF292295Ld16P114D02P114D051R1_035.ab1   (0)   878    57 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  404 nodes

 204 str. conn. components

Path
    1    BF292295Ld16P114D02P114D051F1_035.ab1     1 
  130  C BF292295Ld16P114D02P114D051R1_035.ab1   755 
  134    BF292295Ld16P114D02P114D051F1_035.ab1   134 
  138  C BF292295Ld16P114D02P114D051R1_035.ab1   747 
  142    BF292295Ld16P114D02P114D051F1_035.ab1   142 
  238  C BF292295Ld16P114D02P114D051R1_035.ab1   647 
  246    BF292295Ld16P114D02P114D051F1_035.ab1   246 
  254  C BF292295Ld16P114D02P114D051R1_035.ab1   631 
  278    BF292295Ld16P114D02P114D051F1_035.ab1   278 
  286  C BF292295Ld16P114D02P114D051R1_035.ab1   599 
  298    BF292295Ld16P114D02P114D051F1_035.ab1   298 
  306  C BF292295Ld16P114D02P114D051R1_035.ab1   579 
  310    BF292295Ld16P114D02P114D051F1_035.ab1   310 
  334  C BF292295Ld16P114D02P114D051R1_035.ab1   551 
  466    BF292295Ld16P114D02P114D051F1_035.ab1   466 
  470  C BF292295Ld16P114D02P114D051R1_035.ab1   415 
  750    BF292295Ld16P114D02P114D051F1_035.ab1   750 
  754  C BF292295Ld16P114D02P114D051R1_035.ab1   131 
Contig length: old 884, new 884

Contig length: old 884, new 885
New start: 0 
I Change at: 15; seg lengths: entry 1, contig 0