No. words: 1697; after pruning: 1671


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 17.9 (1,1:881)  800  0.00 0.00 0.00  BF292295Ld21P114D02P114D051F1_042.ab1       14   825 (0)  C BF292295Ld21P114D02P114D051R1_042.ab1   (3)   869    58 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1    BF292295Ld21P114D02P114D051F1_042.ab1     1 
  288  C BF292295Ld21P114D02P114D051R1_042.ab1   595 
  296    BF292295Ld21P114D02P114D051F1_042.ab1   296 
  364  C BF292295Ld21P114D02P114D051R1_042.ab1   519 
  372    BF292295Ld21P114D02P114D051F1_042.ab1   372 
  424  C BF292295Ld21P114D02P114D051R1_042.ab1   459 
  460    BF292295Ld21P114D02P114D051F1_042.ab1   460 
  512  C BF292295Ld21P114D02P114D051R1_042.ab1   371 
  592    BF292295Ld21P114D02P114D051F1_042.ab1   592 
  600  C BF292295Ld21P114D02P114D051R1_042.ab1   283 
  696    BF292295Ld21P114D02P114D051F1_042.ab1   696 
  700  C BF292295Ld21P114D02P114D051R1_042.ab1   183 
Contig length: old 882, new 882

Contig length: old 882, new 882
New start: 0