No. words: 1409; after pruning: 1383


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 3.7 (1,1:775)  504  6.20 0.00 0.00  BF292295Tu02P114D02P114D051F1_013.ab1      117   745 (4)  C BF292295Tu02P114D02P114D051R1_013.ab1   (0)   660    32 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1    BF292295Tu02P114D02P114D051F1_013.ab1     1 
  154  C BF292295Tu02P114D02P114D051R1_013.ab1   623 
  158    BF292295Tu02P114D02P114D051F1_013.ab1   158 
  183  C BF292295Tu02P114D02P114D051R1_013.ab1   594 
  187    BF292295Tu02P114D02P114D051F1_013.ab1   187 
  211  C BF292295Tu02P114D02P114D051R1_013.ab1   566 
  215    BF292295Tu02P114D02P114D051F1_013.ab1   215 
  219  C BF292295Tu02P114D02P114D051R1_013.ab1   558 
  227    BF292295Tu02P114D02P114D051F1_013.ab1   227 
  267  C BF292295Tu02P114D02P114D051R1_013.ab1   510 
  279    BF292295Tu02P114D02P114D051F1_013.ab1   279 
  315  C BF292295Tu02P114D02P114D051R1_013.ab1   462 
  323    BF292295Tu02P114D02P114D051F1_013.ab1   323 
  327  C BF292295Tu02P114D02P114D051R1_013.ab1   450 
  344    BF292295Tu02P114D02P114D051F1_013.ab1   344 
  395  C BF292295Tu02P114D02P114D051R1_013.ab1   382 
  399    BF292295Tu02P114D02P114D051F1_013.ab1   399 
  454  C BF292295Tu02P114D02P114D051R1_013.ab1   323 
  458    BF292295Tu02P114D02P114D051F1_013.ab1   458 
  466  C BF292295Tu02P114D02P114D051R1_013.ab1   311 
  470    BF292295Tu02P114D02P114D051F1_013.ab1   470 
  588  C BF292295Tu02P114D02P114D051R1_013.ab1   189 
  592    BF292295Tu02P114D02P114D051F1_013.ab1   592 
  670  C BF292295Tu02P114D02P114D051R1_013.ab1   107 
  692    BF292295Tu02P114D02P114D051F1_013.ab1   692 
  741  C BF292295Tu02P114D02P114D051R1_013.ab1    36 
Contig length: old 776, new 776

Contig length: old 776, new 776
New start: 0 
S Change at: 179; seg lengths: entry 1, contig 1
S Change at: 675; seg lengths: entry 1, contig 1