No. words: 1649; after pruning: 1609


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.8 (1,1:733)  708  0.00 0.00 0.14  BF292596Ld04P081D01P081D071F1_078.ab1        1   731 (44)  C BF292596Ld04P081D01P081D071R1_078.ab1   (141)   733     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  366 nodes

 185 str. conn. components

Path
    1  C BF292596Ld04P081D01P081D071R1_078.ab1   874 
  145    BF292596Ld04P081D01P081D071F1_078.ab1     4 
  253  C BF292596Ld04P081D01P081D071R1_078.ab1   622 
  305    BF292596Ld04P081D01P081D071F1_078.ab1   164 
  309  C BF292596Ld04P081D01P081D071R1_078.ab1   566 
  857    BF292596Ld04P081D01P081D071F1_078.ab1   716 
  865  C BF292596Ld04P081D01P081D071R1_078.ab1    11 
  869    BF292596Ld04P081D01P081D071F1_078.ab1   728 
Contig length: old 915, new 916

Contig length: old 916, new 916
New start: 0 
S Change at: 104; seg lengths: entry 1, contig 1