No. words: 1769; after pruning: 1722


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 15.7 (1,1:729)  707  0.00 0.14 0.00  BF292596Ld09P081D01P081D071F1_032.ab1        3   730 (175)  C BF292596Ld09P081D01P081D071R1_032.ab1   (135)   729     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1  C BF292596Ld09P081D01P081D071R1_032.ab1   864 
  164    BF292596Ld09P081D01P081D071F1_032.ab1    30 
  172  C BF292596Ld09P081D01P081D071R1_032.ab1   693 
  176    BF292596Ld09P081D01P081D071F1_032.ab1    42 
  180  C BF292596Ld09P081D01P081D071R1_032.ab1   685 
  184    BF292596Ld09P081D01P081D071F1_032.ab1    50 
  220  C BF292596Ld09P081D01P081D071R1_032.ab1   645 
  224    BF292596Ld09P081D01P081D071F1_032.ab1    90 
  236  C BF292596Ld09P081D01P081D071R1_032.ab1   629 
  240    BF292596Ld09P081D01P081D071F1_032.ab1   106 
  256  C BF292596Ld09P081D01P081D071R1_032.ab1   609 
  728    BF292596Ld09P081D01P081D071F1_032.ab1   594 
  736  C BF292596Ld09P081D01P081D071R1_032.ab1   129 
  792    BF292596Ld09P081D01P081D071F1_032.ab1   658 
  800  C BF292596Ld09P081D01P081D071R1_032.ab1    65 
  828    BF292596Ld09P081D01P081D071F1_032.ab1   694 
  832  C BF292596Ld09P081D01P081D071R1_032.ab1    33 
  836    BF292596Ld09P081D01P081D071F1_032.ab1   702 
  844  C BF292596Ld09P081D01P081D071R1_032.ab1    21 
  860    BF292596Ld09P081D01P081D071F1_032.ab1   726 
Contig length: old 1039, new 1039

Contig length: old 1039, new 1039
New start: 0 
S Change at: 105; seg lengths: entry 1, contig 1
S Change at: 112; seg lengths: entry 1, contig 1