No. words: 1734; after pruning: 1694


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.7 (1,1:728)  707  0.00 0.14 0.00  BF292596Ld12P081D01P081D071F1_026.ab1        2   729 (146)  C BF292596Ld12P081D01P081D071R1_026.ab1   (130)   729     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1  C BF292596Ld12P081D01P081D071R1_026.ab1   859 
  155    BF292596Ld12P081D01P081D071F1_026.ab1    25 
  159  C BF292596Ld12P081D01P081D071R1_026.ab1   701 
  171    BF292596Ld12P081D01P081D071F1_026.ab1    41 
  175  C BF292596Ld12P081D01P081D071R1_026.ab1   685 
  179    BF292596Ld12P081D01P081D071F1_026.ab1    49 
  183  C BF292596Ld12P081D01P081D071R1_026.ab1   677 
  191    BF292596Ld12P081D01P081D071F1_026.ab1    61 
  203  C BF292596Ld12P081D01P081D071R1_026.ab1   657 
  207    BF292596Ld12P081D01P081D071F1_026.ab1    77 
  215  C BF292596Ld12P081D01P081D071R1_026.ab1   645 
  219    BF292596Ld12P081D01P081D071F1_026.ab1    89 
  227  C BF292596Ld12P081D01P081D071R1_026.ab1   633 
  247    BF292596Ld12P081D01P081D071F1_026.ab1   117 
  251  C BF292596Ld12P081D01P081D071R1_026.ab1   609 
  727    BF292596Ld12P081D01P081D071F1_026.ab1   597 
  731  C BF292596Ld12P081D01P081D071R1_026.ab1   129 
  783    BF292596Ld12P081D01P081D071F1_026.ab1   653 
  795  C BF292596Ld12P081D01P081D071R1_026.ab1    65 
  823    BF292596Ld12P081D01P081D071F1_026.ab1   693 
  827  C BF292596Ld12P081D01P081D071R1_026.ab1    33 
  831    BF292596Ld12P081D01P081D071F1_026.ab1   701 
  839  C BF292596Ld12P081D01P081D071R1_026.ab1    21 
  847    BF292596Ld12P081D01P081D071F1_026.ab1   717 
  851  C BF292596Ld12P081D01P081D071R1_026.ab1     9 
  855    BF292596Ld12P081D01P081D071F1_026.ab1   725 
Contig length: old 1005, new 1005

Contig length: old 1005, new 1005
New start: 0 
S Change at: 107; seg lengths: entry 1, contig 1