No. words: 1662; after pruning: 1636


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 14.5 (1,1:784)  762  0.00 0.00 0.13  BF292596Sn28P108A07P081D071F1_042.ab1        5   785 (56)  C BF292596Sn28P108A07P081D071R1_042.ab1   (41)   780     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  388 nodes

 196 str. conn. components

Path
    1  C BF292596Sn28P108A07P081D071R1_042.ab1   821 
   45    BF292596Sn28P108A07P081D071F1_042.ab1     8 
  713  C BF292596Sn28P108A07P081D071R1_042.ab1   109 
  717    BF292596Sn28P108A07P081D071F1_042.ab1   680 
  729  C BF292596Sn28P108A07P081D071R1_042.ab1    93 
  741    BF292596Sn28P108A07P081D071F1_042.ab1   704 
  753  C BF292596Sn28P108A07P081D071R1_042.ab1    69 
  761    BF292596Sn28P108A07P081D071F1_042.ab1   724 
  765  C BF292596Sn28P108A07P081D071R1_042.ab1    57 
  769    BF292596Sn28P108A07P081D071F1_042.ab1   732 
  785  C BF292596Sn28P108A07P081D071R1_042.ab1    37 
  801    BF292596Sn28P108A07P081D071F1_042.ab1   764 
Contig length: old 877, new 878

Contig length: old 878, new 878
New start: 0