No. words: 1138; after pruning: 1112


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.0 (1,1:774)  344  1.38 0.00 0.00  BF292596Sn28P108H06P081D071F1_085.ab1      266   628 (0)  C BF292596Sn28P108H06P081D071R1_085.ab1   (0)   510   148 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1    BF292596Sn28P108H06P081D071F1_085.ab1     1 
  398  C BF292596Sn28P108H06P081D071R1_085.ab1   378 
  406    BF292596Sn28P108H06P081D071F1_085.ab1   406 
  426  C BF292596Sn28P108H06P081D071R1_085.ab1   350 
  434    BF292596Sn28P108H06P081D071F1_085.ab1   434 
  438  C BF292596Sn28P108H06P081D071R1_085.ab1   338 
  454    BF292596Sn28P108H06P081D071F1_085.ab1   454 
  462  C BF292596Sn28P108H06P081D071R1_085.ab1   314 
  493    BF292596Sn28P108H06P081D071F1_085.ab1   493 
  501  C BF292596Sn28P108H06P081D071R1_085.ab1   275 
  505    BF292596Sn28P108H06P081D071F1_085.ab1   505 
  509  C BF292596Sn28P108H06P081D071R1_085.ab1   267 
Contig length: old 775, new 775

Contig length: old 775, new 775
New start: 0