No. words: 1655; after pruning: 1629


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 15.9 (1,1:779)  759  0.26 0.00 0.00  BF292596Ta17P108A07P081D071F1_026.ab1        1   778 (42)  C BF292596Ta17P108A07P081D071R1_026.ab1   (55)   780     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  384 nodes

 194 str. conn. components

Path
    1  C BF292596Ta17P108A07P081D071R1_026.ab1   835 
   59    BF292596Ta17P108A07P081D071F1_026.ab1     4 
   71  C BF292596Ta17P108A07P081D071R1_026.ab1   765 
   75    BF292596Ta17P108A07P081D071F1_026.ab1    20 
   83  C BF292596Ta17P108A07P081D071R1_026.ab1   753 
  104    BF292596Ta17P108A07P081D071F1_026.ab1    49 
  120  C BF292596Ta17P108A07P081D071R1_026.ab1   716 
  131    BF292596Ta17P108A07P081D071F1_026.ab1    76 
  527  C BF292596Ta17P108A07P081D071R1_026.ab1   309 
  535    BF292596Ta17P108A07P081D071F1_026.ab1   480 
  543  C BF292596Ta17P108A07P081D071R1_026.ab1   293 
  547    BF292596Ta17P108A07P081D071F1_026.ab1   492 
  619  C BF292596Ta17P108A07P081D071R1_026.ab1   217 
  627    BF292596Ta17P108A07P081D071F1_026.ab1   572 
  659  C BF292596Ta17P108A07P081D071R1_026.ab1   177 
  663    BF292596Ta17P108A07P081D071F1_026.ab1   608 
  671  C BF292596Ta17P108A07P081D071R1_026.ab1   165 
  695    BF292596Ta17P108A07P081D071F1_026.ab1   640 
  699  C BF292596Ta17P108A07P081D071R1_026.ab1   137 
  707    BF292596Ta17P108A07P081D071F1_026.ab1   652 
  715  C BF292596Ta17P108A07P081D071R1_026.ab1   121 
  731    BF292596Ta17P108A07P081D071F1_026.ab1   676 
  735  C BF292596Ta17P108A07P081D071R1_026.ab1   101 
  747    BF292596Ta17P108A07P081D071F1_026.ab1   692 
  759  C BF292596Ta17P108A07P081D071R1_026.ab1    77 
  767    BF292596Ta17P108A07P081D071F1_026.ab1   712 
  771  C BF292596Ta17P108A07P081D071R1_026.ab1    65 
  779    BF292596Ta17P108A07P081D071F1_026.ab1   724 
  787  C BF292596Ta17P108A07P081D071R1_026.ab1    49 
  827    BF292596Ta17P108A07P081D071F1_026.ab1   772 
Contig length: old 875, new 875

Contig length: old 875, new 875
New start: 0