No. words: 1661; after pruning: 1635


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 16.8 (1,1:784)  768  0.00 0.00 0.00  BF292596Ta19P108A07P081D071F1_024.ab1        5   785 (50)  C BF292596Ta19P108A07P081D071R1_024.ab1   (45)   781     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  392 nodes

 198 str. conn. components

Path
    1  C BF292596Ta19P108A07P081D071R1_024.ab1   826 
   53    BF292596Ta19P108A07P081D071F1_024.ab1    12 
  609  C BF292596Ta19P108A07P081D071R1_024.ab1   218 
  613    BF292596Ta19P108A07P081D071F1_024.ab1   572 
  621  C BF292596Ta19P108A07P081D071R1_024.ab1   206 
  625    BF292596Ta19P108A07P081D071F1_024.ab1   584 
  653  C BF292596Ta19P108A07P081D071R1_024.ab1   174 
  657    BF292596Ta19P108A07P081D071F1_024.ab1   616 
  677  C BF292596Ta19P108A07P081D071R1_024.ab1   150 
  685    BF292596Ta19P108A07P081D071F1_024.ab1   644 
  689  C BF292596Ta19P108A07P081D071R1_024.ab1   138 
  693    BF292596Ta19P108A07P081D071F1_024.ab1   652 
  721  C BF292596Ta19P108A07P081D071R1_024.ab1   106 
  725    BF292596Ta19P108A07P081D071F1_024.ab1   684 
  733  C BF292596Ta19P108A07P081D071R1_024.ab1    94 
  745    BF292596Ta19P108A07P081D071F1_024.ab1   704 
  761  C BF292596Ta19P108A07P081D071R1_024.ab1    66 
  765    BF292596Ta19P108A07P081D071F1_024.ab1   724 
  769  C BF292596Ta19P108A07P081D071R1_024.ab1    58 
  773    BF292596Ta19P108A07P081D071F1_024.ab1   732 
  785  C BF292596Ta19P108A07P081D071R1_024.ab1    42 
  821    BF292596Ta19P108A07P081D071F1_024.ab1   780 
Contig length: old 876, new 876

Contig length: old 876, new 876
New start: 0