No. words: 1371; after pruning: 1332


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:-75)  389  0.00 0.00 0.00  BF293133As01P078B05P078B111R1_073.ab1        1   403 (5)    BF293133As01P078B05P078B111R1_044.ab1       76   478 (0) *
Merge:(0)    0    0.0 7.3 (2,1:367)  418  0.00 0.00 0.23  BF293133As01P078B05P078B111R1_044.ab1        1   439 (39)  C BF293133As01P078B05P078B111F1_044.ab1   (43)   442     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  588 nodes

 125 str. conn. components

Path
    1  C BF293133As01P078B05P078B111F1_044.ab1   485 
  322    BF293133As01P078B05P078B111R1_073.ab1   204 
  334  C BF293133As01P078B05P078B111F1_044.ab1   152 
  362    BF293133As01P078B05P078B111R1_044.ab1   319 
  494    BF293133As01P078B05P078B111R1_073.ab1   376 
  498    BF293133As01P078B05P078B111R1_044.ab1   455 
  518    BF293133As01P078B05P078B111R1_073.ab1   400 
Contig length: old 525, new 526

Contig length: old 526, new 526
New start: 0