No. words: 1867; after pruning: 1815


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:-1)  451  0.00 0.21 0.00  BF293133At01P078B05P078B111F1_069.ab1        1   473 (0)    BF293133At01P078B05P078B111F1_040.ab1        1   474 (0) *
Merge:(0)    0    0.0 9.7 (1,1:-22)  428  0.22 0.00 0.00  BF293133At01P078B05P078B111R1_069.ab1        1   448 (2)    BF293133At01P078B05P078B111R1_040.ab1       23   470 (0) *
Merge:(0)    0    0.0 9.5 (2,2:403)  411  0.00 0.00 0.00  BF293133At01P078B05P078B111F1_040.ab1        1   427 (47)  C BF293133At01P078B05P078B111R1_040.ab1   (43)   427     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       3        0

Offset
  0       4 
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1258 nodes

 286 str. conn. components

Path
    1  C BF293133At01P078B05P078B111R1_069.ab1   450 
    9  C BF293133At01P078B05P078B111R1_040.ab1   464 
   13  C BF293133At01P078B05P078B111R1_069.ab1   438 
   17  C BF293133At01P078B05P078B111R1_040.ab1   456 
   25  C BF293133At01P078B05P078B111R1_069.ab1   426 
   37  C BF293133At01P078B05P078B111R1_040.ab1   436 
   45  C BF293133At01P078B05P078B111R1_069.ab1   406 
   57    BF293133At01P078B05P078B111F1_040.ab1    12 
   62  C BF293133At01P078B05P078B111R1_069.ab1   389 
   77    BF293133At01P078B05P078B111F1_040.ab1    32 
   94  C BF293133At01P078B05P078B111R1_069.ab1   357 
  102    BF293133At01P078B05P078B111F1_040.ab1    57 
  125  C BF293133At01P078B05P078B111R1_069.ab1   326 
  130    BF293133At01P078B05P078B111F1_040.ab1    85 
  134  C BF293133At01P078B05P078B111R1_040.ab1   339 
  137    BF293133At01P078B05P078B111F1_040.ab1    92 
  138  C BF293133At01P078B05P078B111R1_040.ab1   335 
  145    BF293133At01P078B05P078B111F1_040.ab1   100 
  181  C BF293133At01P078B05P078B111R1_069.ab1   270 
  182    BF293133At01P078B05P078B111F1_040.ab1   137 
  249  C BF293133At01P078B05P078B111R1_069.ab1   202 
  322  C BF293133At01P078B05P078B111R1_040.ab1   151 
  333    BF293133At01P078B05P078B111F1_040.ab1   288 
  337  C BF293133At01P078B05P078B111R1_069.ab1   114 
  342  C BF293133At01P078B05P078B111R1_040.ab1   131 
  358    BF293133At01P078B05P078B111F1_040.ab1   313 
  363  C BF293133At01P078B05P078B111R1_040.ab1   110 
  377    BF293133At01P078B05P078B111F1_040.ab1   332 
  381  C BF293133At01P078B05P078B111R1_040.ab1    92 
  398    BF293133At01P078B05P078B111F1_040.ab1   353 
  399  C BF293133At01P078B05P078B111R1_040.ab1    74 
  406    BF293133At01P078B05P078B111F1_040.ab1   361 
  409  C BF293133At01P078B05P078B111R1_040.ab1    64 
  410    BF293133At01P078B05P078B111F1_040.ab1   365 
  419  C BF293133At01P078B05P078B111R1_040.ab1    54 
  425    BF293133At01P078B05P078B111F1_040.ab1   380 
  442    BF293133At01P078B05P078B111F1_069.ab1   396 
  454    BF293133At01P078B05P078B111F1_040.ab1   409 
  502    BF293133At01P078B05P078B111F1_069.ab1   456 
  506    BF293133At01P078B05P078B111F1_040.ab1   461 
Contig length: old 519, new 519

Contig length: old 519, new 519
New start: 0