No. words: 1867; after pruning: 1815


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:1)  454  0.00 0.00 0.00  BF293133At02P078B05P078B111F1_067.ab1        2   473 (0)    BF293133At02P078B05P078B111F1_038.ab1        1   472 (0) *
Merge:(0)    0    0.0 9.3 (2,1:425)  406  0.00 0.23 0.00  BF293133At02P078B05P078B111F1_067.ab1        1   426 (47)  C BF293133At02P078B05P078B111R1_038.ab1   (44)   427     1 *
Merge:(0)    0    0.0 9.2 (3,1:405)  428  0.44 0.00 0.00  BF293133At02P078B05P078B111R1_038.ab1       21   471 (0)    BF293133At02P078B05P078B111R1_067.ab1        1   451 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       3        0

Offset
  0       2 
  1       4 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1244 nodes

 234 str. conn. components

Path
    1  C BF293133At02P078B05P078B111R1_067.ab1   451 
    8  C BF293133At02P078B05P078B111R1_038.ab1   464 
   12  C BF293133At02P078B05P078B111R1_067.ab1   440 
   20  C BF293133At02P078B05P078B111R1_038.ab1   452 
   48  C BF293133At02P078B05P078B111R1_067.ab1   404 
   52  C BF293133At02P078B05P078B111R1_038.ab1   420 
   66  C BF293133At02P078B05P078B111R1_067.ab1   386 
   80    BF293133At02P078B05P078B111F1_038.ab1    34 
   90  C BF293133At02P078B05P078B111R1_038.ab1   382 
  104    BF293133At02P078B05P078B111F1_038.ab1    58 
  124  C BF293133At02P078B05P078B111R1_038.ab1   348 
  138    BF293133At02P078B05P078B111F1_038.ab1    92 
  140  C BF293133At02P078B05P078B111R1_067.ab1   312 
  142  C BF293133At02P078B05P078B111R1_038.ab1   330 
  182    BF293133At02P078B05P078B111F1_038.ab1   136 
  254  C BF293133At02P078B05P078B111R1_038.ab1   218 
  286    BF293133At02P078B05P078B111F1_038.ab1   240 
  294  C BF293133At02P078B05P078B111R1_038.ab1   178 
  296    BF293133At02P078B05P078B111F1_038.ab1   250 
  302  C BF293133At02P078B05P078B111R1_038.ab1   170 
  322    BF293133At02P078B05P078B111F1_038.ab1   276 
  328  C BF293133At02P078B05P078B111R1_038.ab1   144 
  332  C BF293133At02P078B05P078B111R1_067.ab1   120 
  344    BF293133At02P078B05P078B111F1_038.ab1   298 
  346  C BF293133At02P078B05P078B111R1_038.ab1   126 
  358    BF293133At02P078B05P078B111F1_038.ab1   312 
  366  C BF293133At02P078B05P078B111R1_038.ab1   106 
  370    BF293133At02P078B05P078B111F1_038.ab1   324 
  382  C BF293133At02P078B05P078B111R1_038.ab1    90 
  394    BF293133At02P078B05P078B111F1_038.ab1   348 
  402  C BF293133At02P078B05P078B111R1_038.ab1    70 
  412    BF293133At02P078B05P078B111F1_038.ab1   366 
  418  C BF293133At02P078B05P078B111R1_038.ab1    54 
  424    BF293133At02P078B05P078B111F1_038.ab1   378 
  494    BF293133At02P078B05P078B111F1_067.ab1   449 
  502    BF293133At02P078B05P078B111F1_038.ab1   456 
Contig length: old 518, new 518

Contig length: old 518, new 518
New start: 0