No. words: 1256; after pruning: 1230


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 7.7 (1,1:468)  443  0.00 0.22 0.22  BF293133Ld01P078B05P078B111F1_014.ab1        5   469 (151)  C BF293133Ld01P078B05P078B111R1_014.ab1   (171)   465     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C BF293133Ld01P078B05P078B111R1_014.ab1   636 
  521    BF293133Ld01P078B05P078B111F1_014.ab1   354 
  581  C BF293133Ld01P078B05P078B111R1_014.ab1    56 
  597    BF293133Ld01P078B05P078B111F1_014.ab1   430 
  609  C BF293133Ld01P078B05P078B111R1_014.ab1    28 
  617    BF293133Ld01P078B05P078B111F1_014.ab1   450 
Contig length: old 787, new 787

Contig length: old 787, new 787
New start: 0