No. words: 1246; after pruning: 1220


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:455)  438  0.00 0.00 0.22  BF293133Ld05P078B05P078B111F1_006.ab1        1   456 (149)  C BF293133Ld05P078B05P078B111R1_006.ab1   (186)   455     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C BF293133Ld05P078B05P078B111R1_006.ab1   641 
  238    BF293133Ld05P078B05P078B111F1_006.ab1    53 
  242  C BF293133Ld05P078B05P078B111R1_006.ab1   400 
  314    BF293133Ld05P078B05P078B111F1_006.ab1   129 
  322  C BF293133Ld05P078B05P078B111R1_006.ab1   320 
  366    BF293133Ld05P078B05P078B111F1_006.ab1   181 
  386  C BF293133Ld05P078B05P078B111R1_006.ab1   256 
  394    BF293133Ld05P078B05P078B111F1_006.ab1   209 
  466  C BF293133Ld05P078B05P078B111R1_006.ab1   176 
  470    BF293133Ld05P078B05P078B111F1_006.ab1   285 
  526  C BF293133Ld05P078B05P078B111R1_006.ab1   116 
  542    BF293133Ld05P078B05P078B111F1_006.ab1   357 
  550  C BF293133Ld05P078B05P078B111R1_006.ab1    92 
  554    BF293133Ld05P078B05P078B111F1_006.ab1   369 
Contig length: old 790, new 790

Contig length: old 790, new 790
New start: 0