No. words: 1160; after pruning: 1120


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.8 (1,1:467)  452  0.00 0.00 0.00  BF293133Ld06P078B05P078B111F1_004.ab1        4   468 (145)  C BF293133Ld06P078B05P078B111R1_004.ab1   (82)   465     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C BF293133Ld06P078B05P078B111R1_004.ab1   547 
  142    BF293133Ld06P078B05P078B111F1_004.ab1    63 
  146  C BF293133Ld06P078B05P078B111R1_004.ab1   402 
  154    BF293133Ld06P078B05P078B111F1_004.ab1    75 
  158  C BF293133Ld06P078B05P078B111R1_004.ab1   390 
  170    BF293133Ld06P078B05P078B111F1_004.ab1    91 
  178  C BF293133Ld06P078B05P078B111R1_004.ab1   370 
  186    BF293133Ld06P078B05P078B111F1_004.ab1   107 
  206  C BF293133Ld06P078B05P078B111R1_004.ab1   342 
  218    BF293133Ld06P078B05P078B111F1_004.ab1   139 
  242  C BF293133Ld06P078B05P078B111R1_004.ab1   306 
  258    BF293133Ld06P078B05P078B111F1_004.ab1   179 
  270  C BF293133Ld06P078B05P078B111R1_004.ab1   278 
  294    BF293133Ld06P078B05P078B111F1_004.ab1   215 
  326  C BF293133Ld06P078B05P078B111R1_004.ab1   222 
  338    BF293133Ld06P078B05P078B111F1_004.ab1   259 
  342  C BF293133Ld06P078B05P078B111R1_004.ab1   206 
  398    BF293133Ld06P078B05P078B111F1_004.ab1   319 
  402  C BF293133Ld06P078B05P078B111R1_004.ab1   146 
  450    BF293133Ld06P078B05P078B111F1_004.ab1   371 
  478  C BF293133Ld06P078B05P078B111R1_004.ab1    70 
  482    BF293133Ld06P078B05P078B111F1_004.ab1   403 
  522  C BF293133Ld06P078B05P078B111R1_004.ab1    26 
  530    BF293133Ld06P078B05P078B111F1_004.ab1   451 
  534  C BF293133Ld06P078B05P078B111R1_004.ab1    14 
  538    BF293133Ld06P078B05P078B111F1_004.ab1   459 
Contig length: old 692, new 692

Contig length: old 692, new 692
New start: 0 
S Change at: 68; seg lengths: entry 1, contig 1