No. words: 1199; after pruning: 1173


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.8 (1,1:440)  411  0.00 0.23 0.23  BF293133Ld09P078B05P078B111F1_029.ab1        5   441 (147)  C BF293133Ld09P078B05P078B111R1_029.ab1   (174)   437     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1  C BF293133Ld09P078B05P078B111R1_029.ab1   611 
  284    BF293133Ld09P078B05P078B111F1_029.ab1   114 
  308  C BF293133Ld09P078B05P078B111R1_029.ab1   304 
  400    BF293133Ld09P078B05P078B111F1_029.ab1   230 
Contig length: old 758, new 758

Contig length: old 758, new 758
New start: 0