No. words: 1265; after pruning: 1239


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:472)  450  0.00 0.42 0.00  BF293133Ld13P078B05P078B111F1_066.ab1        1   472 (149)  C BF293133Ld13P078B05P078B111R1_066.ab1   (170)   474     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C BF293133Ld13P078B05P078B111R1_066.ab1   644 
  214    BF293133Ld13P078B05P078B111F1_066.ab1    42 
  222  C BF293133Ld13P078B05P078B111R1_066.ab1   423 
  286    BF293133Ld13P078B05P078B111F1_066.ab1   114 
  558  C BF293133Ld13P078B05P078B111R1_066.ab1    87 
  562    BF293133Ld13P078B05P078B111F1_066.ab1   390 
Contig length: old 792, new 793

Contig length: old 793, new 793
New start: 0