No. words: 1864; after pruning: 1812


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:-10)  455  0.21 0.00 0.00  BF293133Tu02P078B05P078B111F1_075.ab1        1   477 (0)    BF293133Tu02P078B05P078B111F1_046.ab1       11   487 (0) *
Merge:(0)    0    0.0 9.3 (1,1:-44)  401  0.47 0.00 0.00  BF293133Tu02P078B05P078B111R1_075.ab1        1   423 (10)    BF293133Tu02P078B05P078B111R1_046.ab1       45   467 (0) *
Merge:(0)    0    0.0 9.1 (2,2:378)  402  0.00 0.24 0.00  BF293133Tu02P078B05P078B111F1_075.ab1        1   423 (54)  C BF293133Tu02P078B05P078B111R1_046.ab1   (43)   424     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       3        0

Offset
  0       2 
  1       4 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1212 nodes

 228 str. conn. components

Path
    1  C BF293133Tu02P078B05P078B111R1_075.ab1   433 
   15  C BF293133Tu02P078B05P078B111R1_046.ab1   463 
   23  C BF293133Tu02P078B05P078B111R1_075.ab1   411 
   35  C BF293133Tu02P078B05P078B111R1_046.ab1   443 
  335    BF293133Tu02P078B05P078B111F1_046.ab1   291 
  506    BF293133Tu02P078B05P078B111F1_075.ab1   452 
  514    BF293133Tu02P078B05P078B111F1_046.ab1   470 
Contig length: old 531, new 531

Contig length: old 531, new 531
New start: 0