No. words: 1206; after pruning: 1166


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.1 (1,1:544)  526  0.73 0.00 0.00  BF293500As02P078C05P078C111F1_076.ab1        1   545 (49)  C BF293500As02P078C05P078C111R1_076.ab1   (67)   545     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C BF293500As02P078C05P078C111R1_076.ab1   612 
   77    BF293500As02P078C05P078C111F1_076.ab1    10 
   85  C BF293500As02P078C05P078C111R1_076.ab1   528 
   97    BF293500As02P078C05P078C111F1_076.ab1    30 
  101  C BF293500As02P078C05P078C111R1_076.ab1   512 
  117    BF293500As02P078C05P078C111F1_076.ab1    50 
  133  C BF293500As02P078C05P078C111R1_076.ab1   480 
  154    BF293500As02P078C05P078C111F1_076.ab1    87 
  182  C BF293500As02P078C05P078C111R1_076.ab1   431 
  214    BF293500As02P078C05P078C111F1_076.ab1   147 
  218  C BF293500As02P078C05P078C111R1_076.ab1   395 
  234    BF293500As02P078C05P078C111F1_076.ab1   167 
  242  C BF293500As02P078C05P078C111R1_076.ab1   371 
  274    BF293500As02P078C05P078C111F1_076.ab1   207 
  278  C BF293500As02P078C05P078C111R1_076.ab1   335 
  397    BF293500As02P078C05P078C111F1_076.ab1   330 
  405  C BF293500As02P078C05P078C111R1_076.ab1   208 
  429    BF293500As02P078C05P078C111F1_076.ab1   362 
  437  C BF293500As02P078C05P078C111R1_076.ab1   176 
  461    BF293500As02P078C05P078C111F1_076.ab1   394 
  465  C BF293500As02P078C05P078C111R1_076.ab1   148 
  473    BF293500As02P078C05P078C111F1_076.ab1   406 
  477  C BF293500As02P078C05P078C111R1_076.ab1   136 
  581    BF293500As02P078C05P078C111F1_076.ab1   514 
  585  C BF293500As02P078C05P078C111R1_076.ab1    28 
  601    BF293500As02P078C05P078C111F1_076.ab1   534 
  605  C BF293500As02P078C05P078C111R1_076.ab1     8 
  609    BF293500As02P078C05P078C111F1_076.ab1   542 
Contig length: old 661, new 661

Contig length: old 661, new 661
New start: 0 
S Change at: 73; seg lengths: entry 1, contig 1