No. words: 1198; after pruning: 1172


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:557)  526  1.08 0.18 0.00  BF293500At02P078C05P078C111F1_072.ab1        1   558 (50)  C BF293500At02P078C05P078C111R1_072.ab1   (31)   559     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C BF293500At02P078C05P078C111R1_072.ab1   590 
   49    BF293500At02P078C05P078C111F1_072.ab1    17 
   81  C BF293500At02P078C05P078C111R1_072.ab1   510 
   97    BF293500At02P078C05P078C111F1_072.ab1    65 
  133  C BF293500At02P078C05P078C111R1_072.ab1   458 
  137    BF293500At02P078C05P078C111F1_072.ab1   105 
  170  C BF293500At02P078C05P078C111R1_072.ab1   421 
  174    BF293500At02P078C05P078C111F1_072.ab1   142 
  206  C BF293500At02P078C05P078C111R1_072.ab1   385 
  210    BF293500At02P078C05P078C111F1_072.ab1   178 
  238  C BF293500At02P078C05P078C111R1_072.ab1   353 
  254    BF293500At02P078C05P078C111F1_072.ab1   222 
  258  C BF293500At02P078C05P078C111R1_072.ab1   333 
  274    BF293500At02P078C05P078C111F1_072.ab1   242 
  278  C BF293500At02P078C05P078C111R1_072.ab1   313 
  282    BF293500At02P078C05P078C111F1_072.ab1   250 
  302  C BF293500At02P078C05P078C111R1_072.ab1   289 
  314    BF293500At02P078C05P078C111F1_072.ab1   282 
  322  C BF293500At02P078C05P078C111R1_072.ab1   269 
  342    BF293500At02P078C05P078C111F1_072.ab1   310 
  354  C BF293500At02P078C05P078C111R1_072.ab1   237 
  378    BF293500At02P078C05P078C111F1_072.ab1   346 
  386  C BF293500At02P078C05P078C111R1_072.ab1   205 
  409    BF293500At02P078C05P078C111F1_072.ab1   377 
  417  C BF293500At02P078C05P078C111R1_072.ab1   174 
  538    BF293500At02P078C05P078C111F1_072.ab1   506 
  542  C BF293500At02P078C05P078C111R1_072.ab1    49 
  558    BF293500At02P078C05P078C111F1_072.ab1   526 
  562  C BF293500At02P078C05P078C111R1_072.ab1    29 
  570    BF293500At02P078C05P078C111F1_072.ab1   538 
  574  C BF293500At02P078C05P078C111R1_072.ab1    17 
  582    BF293500At02P078C05P078C111F1_072.ab1   550 
Contig length: old 640, new 640

Contig length: old 640, new 640
New start: 0 
S Change at: 129; seg lengths: entry 1, contig 1
S Change at: 397; seg lengths: entry 1, contig 1