No. words: 1456; after pruning: 1416


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:561)  550  0.00 0.18 0.00  BF293500Ld04P078C05P078C111F1_021.ab1        1   562 (152)  C BF293500Ld04P078C05P078C111R1_021.ab1   (179)   563     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C BF293500Ld04P078C05P078C111R1_021.ab1   742 
  184    BF293500Ld04P078C05P078C111F1_021.ab1     5 
  188  C BF293500Ld04P078C05P078C111R1_021.ab1   555 
  203    BF293500Ld04P078C05P078C111F1_021.ab1    23 
  211  C BF293500Ld04P078C05P078C111R1_021.ab1   532 
  227    BF293500Ld04P078C05P078C111F1_021.ab1    47 
  231  C BF293500Ld04P078C05P078C111R1_021.ab1   512 
  247    BF293500Ld04P078C05P078C111F1_021.ab1    67 
  251  C BF293500Ld04P078C05P078C111R1_021.ab1   492 
  259    BF293500Ld04P078C05P078C111F1_021.ab1    79 
  263  C BF293500Ld04P078C05P078C111R1_021.ab1   480 
  267    BF293500Ld04P078C05P078C111F1_021.ab1    87 
  343  C BF293500Ld04P078C05P078C111R1_021.ab1   400 
  355    BF293500Ld04P078C05P078C111F1_021.ab1   175 
  655  C BF293500Ld04P078C05P078C111R1_021.ab1    88 
  659    BF293500Ld04P078C05P078C111F1_021.ab1   479 
  687  C BF293500Ld04P078C05P078C111R1_021.ab1    56 
  695    BF293500Ld04P078C05P078C111F1_021.ab1   515 
  699  C BF293500Ld04P078C05P078C111R1_021.ab1    44 
  703    BF293500Ld04P078C05P078C111F1_021.ab1   523 
  715  C BF293500Ld04P078C05P078C111R1_021.ab1    28 
  727    BF293500Ld04P078C05P078C111F1_021.ab1   547 
Contig length: old 894, new 894

Contig length: old 894, new 894
New start: 0 
S Change at: 88; seg lengths: entry 1, contig 1