No. words: 1219; after pruning: 1179


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:554)  531  0.54 0.18 0.18  BF293500Ld06P078C05P078C111F1_017.ab1        1   555 (49)  C BF293500Ld06P078C05P078C111R1_017.ab1   (60)   555     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C BF293500Ld06P078C05P078C111R1_017.ab1   615 
   77    BF293500Ld06P078C05P078C111F1_017.ab1    16 
   89  C BF293500Ld06P078C05P078C111R1_017.ab1   527 
  125    BF293500Ld06P078C05P078C111F1_017.ab1    64 
  133  C BF293500Ld06P078C05P078C111R1_017.ab1   483 
  137    BF293500Ld06P078C05P078C111F1_017.ab1    76 
  141  C BF293500Ld06P078C05P078C111R1_017.ab1   475 
  149    BF293500Ld06P078C05P078C111F1_017.ab1    88 
  213  C BF293500Ld06P078C05P078C111R1_017.ab1   403 
  249    BF293500Ld06P078C05P078C111F1_017.ab1   188 
  257  C BF293500Ld06P078C05P078C111R1_017.ab1   359 
  281    BF293500Ld06P078C05P078C111F1_017.ab1   220 
  289  C BF293500Ld06P078C05P078C111R1_017.ab1   327 
  293    BF293500Ld06P078C05P078C111F1_017.ab1   232 
  305  C BF293500Ld06P078C05P078C111R1_017.ab1   311 
  313    BF293500Ld06P078C05P078C111F1_017.ab1   252 
  317  C BF293500Ld06P078C05P078C111R1_017.ab1   299 
  321    BF293500Ld06P078C05P078C111F1_017.ab1   260 
  325  C BF293500Ld06P078C05P078C111R1_017.ab1   291 
  417    BF293500Ld06P078C05P078C111F1_017.ab1   356 
  425  C BF293500Ld06P078C05P078C111R1_017.ab1   191 
  497    BF293500Ld06P078C05P078C111F1_017.ab1   436 
  501  C BF293500Ld06P078C05P078C111R1_017.ab1   115 
  593    BF293500Ld06P078C05P078C111F1_017.ab1   532 
Contig length: old 664, new 665

Contig length: old 665, new 665
New start: 0 
S Change at: 63; seg lengths: entry 1, contig 1