No. words: 1331; after pruning: 1305


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:570)  553  0.00 0.35 0.00  BF293500Ld09P078C05P078C111F1_028.ab1        2   570 (79)  C BF293500Ld09P078C05P078C111R1_028.ab1   (111)   571     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C BF293500Ld09P078C05P078C111R1_028.ab1   682 
  124    BF293500Ld09P078C05P078C111F1_028.ab1    13 
  128  C BF293500Ld09P078C05P078C111R1_028.ab1   555 
  141    BF293500Ld09P078C05P078C111F1_028.ab1    29 
  149  C BF293500Ld09P078C05P078C111R1_028.ab1   534 
  153    BF293500Ld09P078C05P078C111F1_028.ab1    41 
  161  C BF293500Ld09P078C05P078C111R1_028.ab1   522 
  169    BF293500Ld09P078C05P078C111F1_028.ab1    57 
  177  C BF293500Ld09P078C05P078C111R1_028.ab1   506 
  185    BF293500Ld09P078C05P078C111F1_028.ab1    73 
  189  C BF293500Ld09P078C05P078C111R1_028.ab1   494 
  197    BF293500Ld09P078C05P078C111F1_028.ab1    85 
  201  C BF293500Ld09P078C05P078C111R1_028.ab1   482 
  213    BF293500Ld09P078C05P078C111F1_028.ab1   101 
  241  C BF293500Ld09P078C05P078C111R1_028.ab1   442 
  253    BF293500Ld09P078C05P078C111F1_028.ab1   141 
  281  C BF293500Ld09P078C05P078C111R1_028.ab1   402 
  289    BF293500Ld09P078C05P078C111F1_028.ab1   177 
  393  C BF293500Ld09P078C05P078C111R1_028.ab1   290 
  401    BF293500Ld09P078C05P078C111F1_028.ab1   289 
  409  C BF293500Ld09P078C05P078C111R1_028.ab1   274 
  433    BF293500Ld09P078C05P078C111F1_028.ab1   321 
  457  C BF293500Ld09P078C05P078C111R1_028.ab1   226 
  465    BF293500Ld09P078C05P078C111F1_028.ab1   353 
  489  C BF293500Ld09P078C05P078C111R1_028.ab1   194 
  493    BF293500Ld09P078C05P078C111F1_028.ab1   381 
  541  C BF293500Ld09P078C05P078C111R1_028.ab1   142 
  589    BF293500Ld09P078C05P078C111F1_028.ab1   477 
  593  C BF293500Ld09P078C05P078C111R1_028.ab1    90 
  609    BF293500Ld09P078C05P078C111F1_028.ab1   497 
  621  C BF293500Ld09P078C05P078C111R1_028.ab1    62 
  673    BF293500Ld09P078C05P078C111F1_028.ab1   561 
Contig length: old 760, new 761

Contig length: old 761, new 761
New start: 0