No. words: 766; after pruning: 740


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -1.4 -1.4 (1,1:273)  183  9.29 0.74 0.00  BF293500Td10P078C05P101D091F1_040.ab1        2   270 (168)  C BF293500Td10P078C05P101D091R1_040.ab1   (54)   274     4 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.4       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  60 nodes

 32 str. conn. components

Path
    1  C BF293500Td10P078C05P101D091R1_040.ab1   328 
   83    BF293500Td10P078C05P101D091F1_040.ab1    28 
  269  C BF293500Td10P078C05P101D091R1_040.ab1    60 
  313    BF293500Td10P078C05P101D091F1_040.ab1   258 
Contig length: old 492, new 493

Contig length: old 493, new 493
New start: 0 
S Change at: 59; seg lengths: entry 1, contig 1
S Change at: 261; seg lengths: entry 1, contig 1
S Change at: 300; seg lengths: entry 4, contig 4
S Change at: 320; seg lengths: entry 1, contig 1