No. words: 1256; after pruning: 1216


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.5 (1,1:1124)  116  1.54 0.77 0.00  BF429128As01P078D05P078D111F1_066.ab1      499   628 (0)  C BF429128As01P078D05P078D111R1_066.ab1   (0)   628   498 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  56 nodes

 30 str. conn. components

Path
    1    BF429128As01P078D05P078D111F1_066.ab1     1 
  514  C BF429128As01P078D05P078D111R1_066.ab1   613 
  518    BF429128As01P078D05P078D111F1_066.ab1   518 
  550  C BF429128As01P078D05P078D111R1_066.ab1   577 
  558    BF429128As01P078D05P078D111F1_066.ab1   558 
  570  C BF429128As01P078D05P078D111R1_066.ab1   557 
  584    BF429128As01P078D05P078D111F1_066.ab1   583 
  600  C BF429128As01P078D05P078D111R1_066.ab1   527 
Contig length: old 1125, new 1126

Contig length: old 1126, new 1126
New start: 0 
S Change at: 679; seg lengths: entry 1, contig 1