No. words: 1581; after pruning: 1555


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:1132)  435  0.00 0.00 0.22  BF429128As02P078D05P078D111F1_095.ab1      299   746 (0)  C BF429128As02P078D05P078D111R1_095.ab1   (1)   834   388 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1    BF429128As02P078D05P078D111F1_095.ab1     1 
  408  C BF429128As02P078D05P078D111R1_095.ab1   726 
  416    BF429128As02P078D05P078D111F1_095.ab1   416 
  452  C BF429128As02P078D05P078D111R1_095.ab1   682 
  468    BF429128As02P078D05P078D111F1_095.ab1   468 
  476  C BF429128As02P078D05P078D111R1_095.ab1   658 
  480    BF429128As02P078D05P078D111F1_095.ab1   480 
  492  C BF429128As02P078D05P078D111R1_095.ab1   642 
  504    BF429128As02P078D05P078D111F1_095.ab1   504 
  508  C BF429128As02P078D05P078D111R1_095.ab1   626 
  516    BF429128As02P078D05P078D111F1_095.ab1   516 
  520  C BF429128As02P078D05P078D111R1_095.ab1   614 
  524    BF429128As02P078D05P078D111F1_095.ab1   524 
  528  C BF429128As02P078D05P078D111R1_095.ab1   606 
  552    BF429128As02P078D05P078D111F1_095.ab1   552 
  556  C BF429128As02P078D05P078D111R1_095.ab1   578 
  600    BF429128As02P078D05P078D111F1_095.ab1   600 
  604  C BF429128As02P078D05P078D111R1_095.ab1   530 
Contig length: old 1133, new 1133

Contig length: old 1133, new 1133
New start: 0