No. words: 1103; after pruning: 1077


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.3 (1,1:942)  151  0.62 0.00 0.00  BF429128Tu02P078D05P078D111F1_068.ab1      362   521 (0)  C BF429128Tu02P078D05P078D111R1_068.ab1   (0)   582   423 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  78 nodes

 41 str. conn. components

Path
    1    BF429128Tu02P078D05P078D111F1_068.ab1     1 
  365  C BF429128Tu02P078D05P078D111R1_068.ab1   579 
  369    BF429128Tu02P078D05P078D111F1_068.ab1   369 
  377  C BF429128Tu02P078D05P078D111R1_068.ab1   567 
  381    BF429128Tu02P078D05P078D111F1_068.ab1   381 
  389  C BF429128Tu02P078D05P078D111R1_068.ab1   555 
  397    BF429128Tu02P078D05P078D111F1_068.ab1   397 
  405  C BF429128Tu02P078D05P078D111R1_068.ab1   539 
  444    BF429128Tu02P078D05P078D111F1_068.ab1   444 
  448  C BF429128Tu02P078D05P078D111R1_068.ab1   496 
Contig length: old 943, new 943

Contig length: old 943, new 943
New start: 0