No. words: 1560; after pruning: 1534


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.5 (1,1:782)  711  0.00 0.14 0.00  BF429193At01P078E05P078E111F1_087.ab1        1   734 (0)  C BF429193At01P078E05P078E111R1_087.ab1   (42)   784    50 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  366 nodes

 185 str. conn. components

Path
    1  C BF429193At01P078E05P078E111R1_087.ab1   826 
   58    BF429193At01P078E05P078E111F1_087.ab1    15 
   70  C BF429193At01P078E05P078E111R1_087.ab1   757 
   74    BF429193At01P078E05P078E111F1_087.ab1    31 
   78  C BF429193At01P078E05P078E111R1_087.ab1   749 
   82    BF429193At01P078E05P078E111F1_087.ab1    39 
  162  C BF429193At01P078E05P078E111R1_087.ab1   665 
  166    BF429193At01P078E05P078E111F1_087.ab1   123 
  186  C BF429193At01P078E05P078E111R1_087.ab1   641 
  190    BF429193At01P078E05P078E111F1_087.ab1   147 
  222  C BF429193At01P078E05P078E111R1_087.ab1   605 
  226    BF429193At01P078E05P078E111F1_087.ab1   183 
  238  C BF429193At01P078E05P078E111R1_087.ab1   589 
  246    BF429193At01P078E05P078E111F1_087.ab1   203 
  262  C BF429193At01P078E05P078E111R1_087.ab1   565 
  270    BF429193At01P078E05P078E111F1_087.ab1   227 
  282  C BF429193At01P078E05P078E111R1_087.ab1   545 
  290    BF429193At01P078E05P078E111F1_087.ab1   247 
  306  C BF429193At01P078E05P078E111R1_087.ab1   521 
  334    BF429193At01P078E05P078E111F1_087.ab1   291 
  342  C BF429193At01P078E05P078E111R1_087.ab1   485 
  346    BF429193At01P078E05P078E111F1_087.ab1   303 
  354  C BF429193At01P078E05P078E111R1_087.ab1   473 
  358    BF429193At01P078E05P078E111F1_087.ab1   315 
  362  C BF429193At01P078E05P078E111R1_087.ab1   465 
  366    BF429193At01P078E05P078E111F1_087.ab1   323 
  370  C BF429193At01P078E05P078E111R1_087.ab1   457 
  374    BF429193At01P078E05P078E111F1_087.ab1   331 
  378  C BF429193At01P078E05P078E111R1_087.ab1   449 
  418    BF429193At01P078E05P078E111F1_087.ab1   375 
  422  C BF429193At01P078E05P078E111R1_087.ab1   405 
  442    BF429193At01P078E05P078E111F1_087.ab1   399 
  450  C BF429193At01P078E05P078E111R1_087.ab1   377 
Contig length: old 826, new 826

Contig length: old 826, new 826
New start: 0