No. words: 1468; after pruning: 1428


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:781)  606  1.06 0.45 0.15  BF429193At02P078E05P078E111F1_085.ab1        1   661 (0)  C BF429193At02P078E05P078E111R1_085.ab1   (24)   783   121 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C BF429193At02P078E05P078E111R1_085.ab1   807 
   37    BF429193At02P078E05P078E111F1_085.ab1    12 
   57  C BF429193At02P078E05P078E111R1_085.ab1   750 
   61    BF429193At02P078E05P078E111F1_085.ab1    36 
  110  C BF429193At02P078E05P078E111R1_085.ab1   697 
  118    BF429193At02P078E05P078E111F1_085.ab1    93 
  166  C BF429193At02P078E05P078E111R1_085.ab1   641 
  170    BF429193At02P078E05P078E111F1_085.ab1   145 
  178  C BF429193At02P078E05P078E111R1_085.ab1   629 
  182    BF429193At02P078E05P078E111F1_085.ab1   157 
  194  C BF429193At02P078E05P078E111R1_085.ab1   613 
  206    BF429193At02P078E05P078E111F1_085.ab1   181 
  218  C BF429193At02P078E05P078E111R1_085.ab1   589 
  226    BF429193At02P078E05P078E111F1_085.ab1   201 
  246  C BF429193At02P078E05P078E111R1_085.ab1   561 
  250    BF429193At02P078E05P078E111F1_085.ab1   225 
  258  C BF429193At02P078E05P078E111R1_085.ab1   549 
  266    BF429193At02P078E05P078E111F1_085.ab1   241 
  270  C BF429193At02P078E05P078E111R1_085.ab1   537 
  274    BF429193At02P078E05P078E111F1_085.ab1   249 
  278  C BF429193At02P078E05P078E111R1_085.ab1   529 
  282    BF429193At02P078E05P078E111F1_085.ab1   257 
  286  C BF429193At02P078E05P078E111R1_085.ab1   521 
  290    BF429193At02P078E05P078E111F1_085.ab1   265 
  294  C BF429193At02P078E05P078E111R1_085.ab1   513 
  298    BF429193At02P078E05P078E111F1_085.ab1   273 
  302  C BF429193At02P078E05P078E111R1_085.ab1   505 
  318    BF429193At02P078E05P078E111F1_085.ab1   293 
  322  C BF429193At02P078E05P078E111R1_085.ab1   485 
  326    BF429193At02P078E05P078E111F1_085.ab1   301 
  334  C BF429193At02P078E05P078E111R1_085.ab1   473 
  346    BF429193At02P078E05P078E111F1_085.ab1   321 
  350  C BF429193At02P078E05P078E111R1_085.ab1   457 
Contig length: old 807, new 806

Contig length: old 806, new 807
New start: 0 
I Change at: 55; seg lengths: entry 1, contig 0