No. words: 1618; after pruning: 1592


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.6 (1,1:878)  697  0.69 0.00 0.00  BF429193Ld01P078E05P078E111F1_003.ab1        1   720 (0)  C BF429193Ld01P078E05P078E111R1_003.ab1   (19)   879   160 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1  C BF429193Ld01P078E05P078E111R1_003.ab1   898 
   23    BF429193Ld01P078E05P078E111F1_003.ab1     4 
   43  C BF429193Ld01P078E05P078E111R1_003.ab1   856 
   57    BF429193Ld01P078E05P078E111F1_003.ab1    38 
  113  C BF429193Ld01P078E05P078E111R1_003.ab1   786 
  117    BF429193Ld01P078E05P078E111F1_003.ab1    98 
  245  C BF429193Ld01P078E05P078E111R1_003.ab1   654 
  280    BF429193Ld01P078E05P078E111F1_003.ab1   261 
  284  C BF429193Ld01P078E05P078E111R1_003.ab1   615 
  400    BF429193Ld01P078E05P078E111F1_003.ab1   381 
  448  C BF429193Ld01P078E05P078E111R1_003.ab1   451 
  464    BF429193Ld01P078E05P078E111F1_003.ab1   445 
  524  C BF429193Ld01P078E05P078E111R1_003.ab1   375 
Contig length: old 898, new 898

Contig length: old 898, new 898
New start: 0