No. words: 1728; after pruning: 1702


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:1031)  678  0.43 0.00 0.00  BF429193Ld03P078E05P078E111F1_016.ab1      147   842 (0)  C BF429193Ld03P078E05P078E111R1_016.ab1   (0)   886   191 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1    BF429193Ld03P078E05P078E111F1_016.ab1     1 
  154  C BF429193Ld03P078E05P078E111R1_016.ab1   879 
  158    BF429193Ld03P078E05P078E111F1_016.ab1   158 
  190  C BF429193Ld03P078E05P078E111R1_016.ab1   843 
  194    BF429193Ld03P078E05P078E111F1_016.ab1   194 
  206  C BF429193Ld03P078E05P078E111R1_016.ab1   827 
  214    BF429193Ld03P078E05P078E111F1_016.ab1   214 
  222  C BF429193Ld03P078E05P078E111R1_016.ab1   811 
  255    BF429193Ld03P078E05P078E111F1_016.ab1   255 
  263  C BF429193Ld03P078E05P078E111R1_016.ab1   770 
  291    BF429193Ld03P078E05P078E111F1_016.ab1   291 
  295  C BF429193Ld03P078E05P078E111R1_016.ab1   738 
  407    BF429193Ld03P078E05P078E111F1_016.ab1   407 
  411  C BF429193Ld03P078E05P078E111R1_016.ab1   622 
Contig length: old 1032, new 1032

Contig length: old 1032, new 1032
New start: 0