No. words: 1758; after pruning: 1732


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 15.2 (1,1:993)  749  0.00 0.00 0.00  BF429193Ld07P078E05P078E111F1_090.ab1      118   876 (5)  C BF429193Ld07P078E05P078E111R1_090.ab1   (0)   877   119 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1    BF429193Ld07P078E05P078E111F1_090.ab1     1 
  377  C BF429193Ld07P078E05P078E111R1_090.ab1   618 
  381    BF429193Ld07P078E05P078E111F1_090.ab1   381 
  401  C BF429193Ld07P078E05P078E111R1_090.ab1   594 
  433    BF429193Ld07P078E05P078E111F1_090.ab1   433 
  465  C BF429193Ld07P078E05P078E111R1_090.ab1   530 
  505    BF429193Ld07P078E05P078E111F1_090.ab1   505 
  513  C BF429193Ld07P078E05P078E111R1_090.ab1   482 
  529    BF429193Ld07P078E05P078E111F1_090.ab1   529 
  545  C BF429193Ld07P078E05P078E111R1_090.ab1   450 
  729    BF429193Ld07P078E05P078E111F1_090.ab1   729 
  733  C BF429193Ld07P078E05P078E111R1_090.ab1   262 
Contig length: old 994, new 994

Contig length: old 994, new 994
New start: 0