No. words: 1787; after pruning: 1733


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.6 (1,1:1031)  736  0.27 0.13 0.00  BF429193Ld13P078E05P078E111F1_066.ab1      156   909 (0)  C BF429193Ld13P078E05P078E111R1_066.ab1   (0)   878   124 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  358 nodes

 181 str. conn. components

Path
    1    BF429193Ld13P078E05P078E111F1_066.ab1     1 
  442  C BF429193Ld13P078E05P078E111R1_066.ab1   591 
  454    BF429193Ld13P078E05P078E111F1_066.ab1   454 
  478  C BF429193Ld13P078E05P078E111R1_066.ab1   555 
  502    BF429193Ld13P078E05P078E111F1_066.ab1   502 
  522  C BF429193Ld13P078E05P078E111R1_066.ab1   511 
  550    BF429193Ld13P078E05P078E111F1_066.ab1   550 
  586  C BF429193Ld13P078E05P078E111R1_066.ab1   447 
  594    BF429193Ld13P078E05P078E111F1_066.ab1   594 
  606  C BF429193Ld13P078E05P078E111R1_066.ab1   427 
  618    BF429193Ld13P078E05P078E111F1_066.ab1   618 
  630  C BF429193Ld13P078E05P078E111R1_066.ab1   403 
  646    BF429193Ld13P078E05P078E111F1_066.ab1   646 
  658  C BF429193Ld13P078E05P078E111R1_066.ab1   375 
Contig length: old 1032, new 1032

Contig length: old 1032, new 1032
New start: 0