No. words: 1738; after pruning: 1712


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.7 (1,1:1522)  203  0.00 0.00 0.00  BF429272Ld04P078F05P078F111F1_004.ab1      628   842 (0)  C BF429272Ld04P078F05P078F111R1_004.ab1   (0)   896   682 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  108 nodes

 56 str. conn. components

Path
    1    BF429272Ld04P078F05P078F111F1_004.ab1     1 
  732  C BF429272Ld04P078F05P078F111R1_004.ab1   792 
  740    BF429272Ld04P078F05P078F111F1_004.ab1   740 
  752  C BF429272Ld04P078F05P078F111R1_004.ab1   772 
  760    BF429272Ld04P078F05P078F111F1_004.ab1   760 
  764  C BF429272Ld04P078F05P078F111R1_004.ab1   760 
  792    BF429272Ld04P078F05P078F111F1_004.ab1   792 
  796  C BF429272Ld04P078F05P078F111R1_004.ab1   728 
Contig length: old 1523, new 1523

Contig length: old 1523, new 1523
New start: 0