No. words: 1678; after pruning: 1652


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.6 (1,1:1277)  378  0.25 0.00 0.00  BF429272Sn30P116C08P078F111F1_052.ab1      409   808 (0)  C BF429272Sn30P116C08P078F111R1_052.ab1   (0)   870   471 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1    BF429272Sn30P116C08P078F111F1_052.ab1     1 
  568  C BF429272Sn30P116C08P078F111R1_052.ab1   711 
  572    BF429272Sn30P116C08P078F111F1_052.ab1   572 
  576  C BF429272Sn30P116C08P078F111R1_052.ab1   703 
  580    BF429272Sn30P116C08P078F111F1_052.ab1   580 
  592  C BF429272Sn30P116C08P078F111R1_052.ab1   687 
  600    BF429272Sn30P116C08P078F111F1_052.ab1   600 
  608  C BF429272Sn30P116C08P078F111R1_052.ab1   671 
  616    BF429272Sn30P116C08P078F111F1_052.ab1   616 
  648  C BF429272Sn30P116C08P078F111R1_052.ab1   631 
Contig length: old 1278, new 1278

Contig length: old 1278, new 1278
New start: 0