No. words: 1584; after pruning: 1558


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:1133)  426  0.00 0.00 0.22  BF429272Td05P116B08P078F111F1_011.ab1      292   741 (0)  C BF429272Td05P116B08P078F111R1_011.ab1   (0)   843   395 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1    BF429272Td05P116B08P078F111F1_011.ab1     1 
  539  C BF429272Td05P116B08P078F111R1_011.ab1   596 
  551    BF429272Td05P116B08P078F111F1_011.ab1   551 
  555  C BF429272Td05P116B08P078F111R1_011.ab1   580 
  567    BF429272Td05P116B08P078F111F1_011.ab1   567 
  571  C BF429272Td05P116B08P078F111R1_011.ab1   564 
  587    BF429272Td05P116B08P078F111F1_011.ab1   587 
  591  C BF429272Td05P116B08P078F111R1_011.ab1   544 
Contig length: old 1134, new 1134

Contig length: old 1134, new 1134
New start: 0