No. words: 1018; after pruning: 979


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.3 (1,1:299)  279  0.00 0.68 0.34  BF473348As02P016G06G12F1_091.scf        5   300 (37)  C BF473348As02P016G06G12R1_091.ab1   (47)   297     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  136 nodes

 70 str. conn. components

Path
    1  C BF473348As02P016G06G12R1_091.ab1   344 
   61    BF473348As02P016G06G12F1_091.scf    17 
   69  C BF473348As02P016G06G12R1_091.ab1   276 
   85    BF473348As02P016G06G12F1_091.scf    40 
Contig length: old 381, new 382

Contig length: old 382, new 382
New start: 0