No. words: 1068; after pruning: 1029


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.9 (1,1:311)  301  0.00 0.64 0.00  BF473348At02P016G06G12F1_087.scf        1   311 (46)  C BF473348At02P016G06G12R1_087.ab1   (41)   313     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  152 nodes

 78 str. conn. components

Path
    1  C BF473348At02P016G06G12R1_087.ab1   354 
   61    BF473348At02P016G06G12F1_087.scf    18 
Contig length: old 399, new 400

Contig length: old 400, new 400
New start: 0