No. words: 1455; after pruning: 1416


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.8 (1,1:316)  294  0.00 0.96 0.32  BF473348Ld04P016G06G12F1_094.scf        1   313 (185)  C BF473348Ld04P016G06G12R1_094.ab1   (140)   319     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  144 nodes

 74 str. conn. components

Path
    1  C BF473348Ld04P016G06G12R1_094.ab1   459 
  166    BF473348Ld04P016G06G12F1_094.scf    24 
  170  C BF473348Ld04P016G06G12R1_094.ab1   290 
  186    BF473348Ld04P016G06G12F1_094.scf    43 
Contig length: old 640, new 641

Contig length: old 641, new 641
New start: 0