No. words: 1615; after pruning: 1575


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.4 (1,1:947)  641  0.90 0.00 0.15  BF474023Sn30P088B09P095A121F1_088.ab1       89   755 (0)  C BF474023Sn30P088B09P095A121R1_088.ab1   (0)   860   195 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1    BF474023Sn30P088B09P095A121F1_088.ab1     1 
   93  C BF474023Sn30P088B09P095A121R1_088.ab1   856 
  101    BF474023Sn30P088B09P095A121F1_088.ab1   101 
  133  C BF474023Sn30P088B09P095A121R1_088.ab1   816 
  160    BF474023Sn30P088B09P095A121F1_088.ab1   160 
  164  C BF474023Sn30P088B09P095A121R1_088.ab1   785 
  176    BF474023Sn30P088B09P095A121F1_088.ab1   176 
  180  C BF474023Sn30P088B09P095A121R1_088.ab1   769 
  210    BF474023Sn30P088B09P095A121F1_088.ab1   210 
  219  C BF474023Sn30P088B09P095A121R1_088.ab1   730 
  274    BF474023Sn30P088B09P095A121F1_088.ab1   275 
  290  C BF474023Sn30P088B09P095A121R1_088.ab1   659 
  294    BF474023Sn30P088B09P095A121F1_088.ab1   295 
  338  C BF474023Sn30P088B09P095A121R1_088.ab1   611 
  346    BF474023Sn30P088B09P095A121F1_088.ab1   347 
  446  C BF474023Sn30P088B09P095A121R1_088.ab1   503 
  450    BF474023Sn30P088B09P095A121F1_088.ab1   451 
  478  C BF474023Sn30P088B09P095A121R1_088.ab1   471 
  586    BF474023Sn30P088B09P095A121F1_088.ab1   587 
  590  C BF474023Sn30P088B09P095A121R1_088.ab1   359 
  594    BF474023Sn30P088B09P095A121F1_088.ab1   595 
  638  C BF474023Sn30P088B09P095A121R1_088.ab1   311 
  642    BF474023Sn30P088B09P095A121F1_088.ab1   643 
  654  C BF474023Sn30P088B09P095A121R1_088.ab1   295 
  680    BF474023Sn30P088B09P095A121F1_088.ab1   681 
  684  C BF474023Sn30P088B09P095A121R1_088.ab1   265 
  708    BF474023Sn30P088B09P095A121F1_088.ab1   709 
  722  C BF474023Sn30P088B09P095A121R1_088.ab1   227 
  730    BF474023Sn30P088B09P095A121F1_088.ab1   731 
  734  C BF474023Sn30P088B09P095A121R1_088.ab1   215 
Contig length: old 948, new 948

Contig length: old 948, new 948
New start: 0 
S Change at: 660; seg lengths: entry 1, contig 1