No. words: 1561; after pruning: 1507


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.3 (1,1:1030)  517  0.94 0.00 0.00  BF474023Sn32P088B09P095A121F1_086.ab1      303   832 (0)  C BF474023Sn32P088B09P095A121R1_086.ab1   (0)   729   200 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1    BF474023Sn32P088B09P095A121F1_086.ab1     1 
  498  C BF474023Sn32P088B09P095A121R1_086.ab1   534 
  502    BF474023Sn32P088B09P095A121F1_086.ab1   502 
  530  C BF474023Sn32P088B09P095A121R1_086.ab1   502 
  538    BF474023Sn32P088B09P095A121F1_086.ab1   538 
  542  C BF474023Sn32P088B09P095A121R1_086.ab1   490 
Contig length: old 1031, new 1031

Contig length: old 1031, new 1031
New start: 0