No. words: 1714; after pruning: 1688


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.0 (1,1:1479)  217  1.28 0.00 0.43  BF474023Ta20P034H08P003B111F1_025.ab1      557   791 (0)  C BF474023Ta20P034H08P003B111R1_025.ab1   (0)   923   690 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  108 nodes

 56 str. conn. components

Path
    1    BF474023Ta20P034H08P003B111F1_025.ab1     1 
  589  C BF474023Ta20P034H08P003B111R1_025.ab1   892 
  593    BF474023Ta20P034H08P003B111F1_025.ab1   593 
  661  C BF474023Ta20P034H08P003B111R1_025.ab1   820 
  665    BF474023Ta20P034H08P003B111F1_025.ab1   665 
  689  C BF474023Ta20P034H08P003B111R1_025.ab1   792 
  693    BF474023Ta20P034H08P003B111F1_025.ab1   693 
  697  C BF474023Ta20P034H08P003B111R1_025.ab1   784 
Contig length: old 1480, new 1480

Contig length: old 1480, new 1480
New start: 0