No. words: 1445; after pruning: 1419


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:573)  556  0.00 0.17 0.35  BF474092Ld08P067B05P067B111F1_092.ab1        1   575 (138)  C BF474092Ld08P067B05P067B111R1_092.ab1   (158)   574     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C BF474092Ld08P067B05P067B111R1_092.ab1   732 
  180    BF474092Ld08P067B05P067B111F1_092.ab1    21 
  188  C BF474092Ld08P067B05P067B111R1_092.ab1   545 
  516    BF474092Ld08P067B05P067B111F1_092.ab1   357 
  600  C BF474092Ld08P067B05P067B111R1_092.ab1   133 
  608    BF474092Ld08P067B05P067B111F1_092.ab1   449 
  616  C BF474092Ld08P067B05P067B111R1_092.ab1   117 
  624    BF474092Ld08P067B05P067B111F1_092.ab1   465 
Contig length: old 871, new 872

Contig length: old 872, new 872
New start: 0